https://wiki.sasgaming.net/index.php?action=history&feed=atom&title=Template%3AMC%2FClade%2Fdoc 2026-04-10T14:07:31Z Revision history for this page on the wiki MediaWiki 1.43.8 https://wiki.sasgaming.net/index.php?title=Template:MC/Clade/doc&diff=42507&oldid=prev 2023-12-06T20:38:42Z

<p></p> <p><b>New page</b></p><div>{{documentation header}}<br /> &lt;!-- Documentation here --&gt;<br /> This template is used for illustrating branching trees with the nodes and base labels being clickable links. They are especially suited to represent evolutionary trees.<br /> <br /> === Usage ===<br /> <br /> &lt;pre&gt;<br /> &lt;nowiki&gt;<br /> {{clade<br /> |label1=Base<br /> |1=Node<br /> }}<br /> &lt;/nowiki&gt;<br /> &lt;/pre&gt;<br /> <br /> produces<br /> <br /> {{clade<br /> |label1=Base<br /> |1=Node<br /> }}<br /> <br /> &lt;pre&gt;<br /> &lt;nowiki&gt;<br /> {{clade<br /> |1={{clade<br /> |label1=[[Oak]]<br /> |1=Oak Leaves<br /> |label2=Acacia<br /> |2=[[Acacia Leaves]]<br /> }}<br /> }}<br /> &lt;/nowiki&gt;<br /> &lt;/pre&gt;<br /> <br /> produces<br /> <br /> {{clade<br /> |1={{clade<br /> |label1=[[Oak]]&amp;nbsp;<br /> |1=Oak Leaves<br /> |label2=Acacia&amp;nbsp;<br /> |2=[[Acacia Leaves]]<br /> }}<br /> }}<br /> <br /> &lt;pre&gt;<br /> &lt;nowiki&gt;<br /> {{clade| style=font-size:75%;line-height:75%<br /> |1={{clade<br /> |label1=Subtree1<br /> |1=Leaf1<br /> |label2=Subtree2<br /> |2=Leaf2<br /> }}<br /> }}<br /> &lt;/nowiki&gt;<br /> &lt;/pre&gt;<br /> <br /> produces<br /> <br /> {{clade| style=font-size:75%;line-height:75%<br /> |1={{clade<br /> |label1=Subtree1<br /> |1=Leaf1<br /> |label2=Subtree2<br /> |2=Leaf2<br /> }}<br /> }}<br /> <br /> &lt;pre&gt;<br /> &lt;nowiki&gt;<br /> {{clade<br /> |1={{clade<br /> |1={{clade | thickness=3<br /> |1=Leaf1<br /> |2=Leaf2<br /> }}<br /> |2=Leaf3<br /> }}<br /> }}<br /> &lt;/nowiki&gt;<br /> &lt;/pre&gt;<br /> <br /> produces<br /> <br /> {{clade<br /> |1={{clade<br /> |1={{clade | thickness=3<br /> |1=Leaf1<br /> |2=Leaf2<br /> }}<br /> |2=Leaf3<br /> }}<br /> }}<br /> <br /> To replace the solid line with a dashed line, use |stateN=dashed:<br /> &lt;pre&gt;<br /> &lt;nowiki&gt;<br /> {{clade<br /> |1={{clade<br /> |1={{clade<br /> |1=Leaf1|state1=dashed<br /> |2=Leaf2<br /> }}<br /> |2=Leaf3<br /> }}<br /> }}<br /> &lt;/nowiki&gt;<br /> &lt;/pre&gt;<br /> <br /> produces<br /> {{clade<br /> |1={{clade<br /> |1={{clade<br /> |1=Leaf1|state1=dashed<br /> |2=Leaf2<br /> }}<br /> |2=Leaf3<br /> }}<br /> }}<br /> <br /> === Tips ===<br /> <br /> An easy way of creating larger cladograms is to use the Newick format and proceed to edit it using a suitable text editor to produce the markup.<br /> <br /> # Start with [[wp:Newick format|Newick format]] ((a,b),(c,d))<br /> # Replace &quot;(&quot; with &lt;nowiki&gt;&quot;{{clade|&quot;&lt;/nowiki&gt;<br /> # Replace &quot;)&quot; with &lt;nowiki&gt;&quot;}}&quot;&lt;/nowiki&gt;<br /> # Edit to replace commas with pipes and numbers<br /> # Edit clade labels if needed<br /> &lt;pre&gt;<br /> &lt;nowiki&gt;<br /> {{clade<br /> |1={{clade<br /> |1=a<br /> |2=b<br /> }}<br /> |2={{clade<br /> |1=c<br /> |2=d<br /> }}<br /> }}<br /> &lt;/nowiki&gt;<br /> &lt;/pre&gt;<br /> <br /> Example Perl script to automate the conversion:<br /> &lt;pre&gt;<br /> use constant N=&gt;&quot;\n&quot;;<br /> use constant T=&gt;&quot;\t&quot;;<br /> <br /> my $tree=&#039;((a,b),(c,d));&#039;; # get sequence<br /> $tree=~s/[\n\r]//g; # loose those spaces<br /> $tree=~ s/\:[\.\d]+//g; # loose those lengths<br /> while ($tree=~ m/\(/) {<br /> foreach my $clade ($tree=~ m/\(([^\(\)]+)\)/g) {<br /> my @branches=split /\,/,$clade;<br /> s/(\t+)/$1\t/g for @branches;<br /> die &#039;ERROR: degenerate/empty node!&#039;.N if $#branches&lt;1;<br /> $tree=~ s/\(\Q$clade\E\)/${\join(&#039;&#039;,&#039;&#039;)}/; # substitute<br /> }<br /> pos($tree)=0;<br /> }<br /> $tree=~s/(\t*)\t\}\}/$1\}\}/g; # lazy fix<br /> <br /> print $tree;<br /> &lt;/pre&gt;<br /> <br /> === Using a box ===<br /> <br /> You can nest the templates and use links around the text. You may use non-breaking spaces (&amp;amp;nbsp;) to obtain spaces or to have labels that have spaces.<br /> <br /> The entire cladogram can be placed in a box so that text flows nicely around it.<br /> <br /> &lt;includeonly&gt;<br /> &lt;!-- Template categories/interwiki here --&gt;<br /> [[Category:Formatting templates]]<br /> [[ja:テンプレート:Clade]]<br /> [[pt:Predefinição:Clade]]<br /> &lt;/includeonly&gt;<br /> &lt;noinclude&gt;<br /> &lt;!-- Documentation categories/interwiki here --&gt;<br /> [[pt:Predefinição:Clade/doc]]<br /> &lt;/noinclude&gt;</div>

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